Biography

Graduated from the Saint-Petersburg State Polytechnical University, Department of Applied Mathematics in 2013 as a master in Applied Mathematics.

06.2017 – present Researcher at the BioLabs.

07.2013 – 06.2017 Developer of the pharmacology research systems.

Professional Activity

Academic Advising

Projects

  • SPAN Peak Analyzer and JBR Genome Browser can be used separately as general-purpose peak caller and genome browser, respectively. However, together, they can serve as a complete solution for peak calling. The semi-supervised peak calling approach is capable of improving peaks consistency in datasets with different signal-to-noise ratio, as well as obtaining the best peak calling results for individual samples.
  • Automated Ishikawa Fishbone Diagram construction for epigenetics data
  • JBR - genome browser with peak calling functionality, multiple locations mode, and more

Publications

  • Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz & Maxim N. Artyomov
    Nature Aging, November 2020
  • Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz, Maxim N. Artyomov
    bioRxiv preprint, May 2020
  • O. Shpynov, A. Dievskii, P. Tsurinov, et al
    Saint-Petersburg, ISBN 978-5-6043094-2-1, June 2019
  • Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov and Maxim Artyomov
    Proceedings of the 17th European conference on computational biology, September 2018
  • Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov, Maxim N. Artyomov
    Proceedings of Biata2018 Bioinformatics: from algorithms to applications, July 2018
  • BioLabs Researcher
    • Epigenome browser
    • Epigenomic data anomaly search
    • Associated rule mining
    • Single cell RNA-seq analysis
    • Blood plasma data investigation